A Comparison of Phylogenetic Reconstruction Methods on an IE Dataset Luay Nakhleh Tandy Warnow Dept. of Computer Science

Source URL: www.cs.utexas.edu

• Phylogenetics
• Computational phylogenetics
• Maximum parsimony
• Quantitative comparative linguistics
• Cladistics
• Graeco-Armenian
• Phylogenetic tree
• UPGMA
• Perfect phylogeny
• Neighbor joining
• Lexical
• Distance matrices in phylogeny

G:informaticsinfoissue166.dvi

Source URL: www.biologie.ens.fr

• Biology
• Phylogenetics
• Biodiversity
• Evolutionary biology
• Measurement of biodiversity
• Phylogenetic tree
• Bioinformatics
• Systematics
• Phylogenetic comparative methods

Ann. N.Y. Acad. Sci. ISSNA N N A L S O F T H E N E W Y O R K A C A D E M Y O F SC I E N C E S Issue: The Year in Evolutionary Biology An integrative view of phylogenetic comparative methods:

Source URL: mwpennell.github.io

Evolutionary Ecology Research, 2004, 6: 377–396 Rapidly evolving traits and the comparative method: how important is testing for phylogenetic signal? Frank E. Rheindt,1* T. Ulmar Grafe2 and Ehab Abouheif1‡ 1

Source URL: biology.mcgill.ca

• Phylogenetics
• Phylogenetic tree
• Molecular phylogenetics
• Evolutionary grade
• Systematics
• Phylogenetic comparative methods
• Phylogenetic inertia

Comparative Methods for the Analysis of Gene-Expression Evolution: An Example Using Yeast Functional Genomic Data Todd H. Oakley,* 1 Zhenglong Gu,* Ehab Abouheif, 3 Nipam H. Patel, 2 and Wen-Hsiung Li* *Ecology and Ev

Source URL: biology.mcgill.ca

• Biology
• Gene expression
• Molecular genetics
• Molecular evolution
• Mutation
• Phylogenetics
• Ridge
• Phylogenetic comparative methods
• Gene regulatory network
• Evolution by gene duplication
• Bioinformatics
• Gene duplication

Aquatic insect ecophysiological traits reveal phylogenetically based differences in dissolved cadmium susceptibility David B. Buchwalter*†, Daniel J. Cain‡, Caitrin A. Martin*, Lingtian Xie*, Samuel N. Luoma‡, and

Source URL: biology.ucr.edu

• Toxicology
• Phylogenetics
• Mayfly
• Plecoptera
• Phylogenetic comparative methods
• Insect
• Ephemerellidae
• Cadmium
• Bioaccumulation
• Species
• Aquatic insect

File = PDTREE Mesquite.doc, copyright by Theodore Garland, Jr. This is version of 16 NovBegun 18 March 2005 by modification of PDINSTRW.DOC, which is the documentation for the DOS PDAP programs. This is just a s

Source URL: www.biology.ucr.edu

• Statistics
• Knowledge
• Regression analysis
• Estimation theory
• Actuarial science
• Linear regression
• Logistic regression
• Errors and residuals
• Data transformation
• Phylogenetic comparative methods
• Principal component analysis
• Projection matrix

Aquatic insect ecophysiological traits reveal phylogenetically based differences in dissolved cadmium susceptibility David B. Buchwalter*†, Daniel J. Cain‡, Caitrin A. Martin*, Lingtian Xie*, Samuel N. Luoma‡, and

Source URL: wwwrcamnl.wr.usgs.gov

• Nature
• Science
• Phylogenetic comparative methods
• Entomology
• Allometry
• Phylogenetic tree
• Insect
• Species
• Bioaccumulation
• Phylogenetics
• Biology
• Physiology

SUPPLEMENTAL MATERIAL FOR HUNT AND CARRANOPALEONTOLOGICAL SOCIETY SHORTCOURSE Likelihood Inference for Evolutionary Models Likelihood is defined as the probability of obtaining the observed data, given a specifie

Source URL: www.paleosoc.org

• Covariance and correlation
• Matrices
• Summary statistics
• Covariance matrix
• Phylogenetic comparative methods
• Variance
• Multivariate normal distribution
• Normal distribution
• Maximum likelihood
• Statistics
• Data analysis
• Phylogenetics

PDF Document

Source URL: ucjeps.berkeley.edu

• Tree of life
• Phylogenetics
• Phylogenetic comparative methods